Generates targets QC plots

Computes multiple QC plots and arranges into a figure with subpanels:

a

Genomic copy-number vs average size (in kbs) of selected (red) vs all other families in guideSet.

b

Genomic copy-number of selected families on autosomes and sex chromosomes (other refers to alternative chromosome assemblies).

c

Size distribution of selected families.

d

Multiple sequence alignment of selected families. Rows represent individual loci and columns position on the alignment.

e

CpG density along the consensus model. Positions are identical to (d).

f

Position on the consensus model (as in e) of putative cis regulatory features.

plotTargets(guideSet)

Arguments

guideSet	guideSet containing combinations.

Value

list of ggplot objects.

See also

addTargets(), and export()

Examples

# NOT RUN {
gs <- createGuideSet(Hsapiens, tes = te_annotation_df)
gs <- addTargets(gs, targets = 'LTR13A')
gs <- addGuides(gs, guide_length = 16)
gs <- plotGuides(gs)
# }