Index

A

AbnormalHandler (in module dafpy.generic_functions) Abs (class in dafpy.operations) adapter() (in module dafpy.adapters) add_axis() (dafpy.data.DafWriter method) ALL_AXES (in module dafpy.views) ALL_MATRICES (in module dafpy.views) ALL_SCALARS (in module dafpy.views) ALL_VECTORS (in module dafpy.views) And (class in dafpy.queries)

AndNot (class in dafpy.queries) AsAxis (class in dafpy.queries) axes_set() (dafpy.data.DafReader method) Axis (class in dafpy.queries) axis_dict() (dafpy.data.DafReader method) axis_length() (dafpy.data.DafReader method) axis_np_entries() (dafpy.data.DafReader method) axis_np_indices() (dafpy.data.DafReader method) axis_np_vector() (dafpy.data.DafReader method) axis_pd_indices() (dafpy.data.DafReader method)

C

CacheGroup (in module dafpy.data) chain_reader() (in module dafpy.formats) chain_writer() (in module dafpy.formats) Clamp (class in dafpy.operations) complete_daf() (in module dafpy.formats) concatenate() (in module dafpy.concat) Convert (class in dafpy.operations)

copy_all() (in module dafpy.copies) copy_axis() (in module dafpy.copies) copy_matrix() (in module dafpy.copies) copy_scalar() (in module dafpy.copies) copy_tensor() (in module dafpy.copies) copy_vector() (in module dafpy.copies) CountBy (class in dafpy.queries)

D

daf_as_h5ad() (in module dafpy.anndata_format) dafpy module dafpy.adapters module dafpy.anndata_format module dafpy.concat module dafpy.copies module dafpy.data module dafpy.example_data module dafpy.formats module dafpy.generic_functions module

dafpy.julia_import module dafpy.operations module dafpy.queries module dafpy.reconstruction module dafpy.storage_types module dafpy.views module DafReader (class in dafpy.data) DafReadOnly (class in dafpy.data) DafWriter (class in dafpy.data) delete_axis() (dafpy.data.DafWriter method) delete_matrix() (dafpy.data.DafWriter method) delete_scalar() (dafpy.data.DafWriter method) delete_vector() (dafpy.data.DafWriter method) description() (dafpy.data.DafReader method)

E

EltwiseOperation (class in dafpy.operations) empty_cache() (dafpy.data.DafReader method) empty_dense_matrix() (dafpy.data.DafWriter method) empty_dense_vector() (dafpy.data.DafWriter method) empty_sparse_matrix() (dafpy.data.DafWriter method)

empty_sparse_vector() (dafpy.data.DafWriter method) EmptyData (in module dafpy.copies) example_cells_daf() (in module dafpy.example_data) example_chain_daf() (in module dafpy.example_data) example_metacells_daf() (in module dafpy.example_data)

F

Fetch (class in dafpy.queries)

files_daf() (in module dafpy.formats) Fraction (class in dafpy.operations)

G

get_np_matrix() (dafpy.data.DafReader method) get_np_query() (dafpy.data.DafReader method) get_np_vector() (dafpy.data.DafReader method) get_pd_frame() (dafpy.data.DafReader method)

get_pd_matrix() (dafpy.data.DafReader method) get_pd_query() (dafpy.data.DafReader method) get_pd_vector() (dafpy.data.DafReader method) get_scalar() (dafpy.data.DafReader method) GroupBy (class in dafpy.queries)

H

h5ad_as_daf() (in module dafpy.anndata_format) h5df() (in module dafpy.formats) has_axis() (dafpy.data.DafReader method)

has_matrix() (dafpy.data.DafReader method) has_query() (dafpy.data.DafReader method) has_scalar() (dafpy.data.DafReader method) has_vector() (dafpy.data.DafReader method)

I

IfMissing (class in dafpy.queries) IfNot (class in dafpy.queries) inefficient_action_handler() (in module dafpy.generic_functions) IsEqual (class in dafpy.queries) IsGreater (class in dafpy.queries)

IsGreaterEqual (class in dafpy.queries) IsLess (class in dafpy.queries) IsLessEqual (class in dafpy.queries) IsMatch (class in dafpy.queries) IsNotEqual (class in dafpy.queries) IsNotMatch (class in dafpy.queries)

J

jl (in module dafpy.julia_import)

jl_version (in module dafpy.julia_import)

L

Log (class in dafpy.operations)

LogLevel (in module dafpy.generic_functions) Lookup (class in dafpy.queries)

M

MaskSlice (class in dafpy.queries) matrices_set() (dafpy.data.DafReader method) Max (class in dafpy.operations) Mean (class in dafpy.operations) Median (class in dafpy.operations) memory_daf() (in module dafpy.formats) Min (class in dafpy.operations) module dafpy dafpy.adapters dafpy.anndata_format dafpy.concat dafpy.copies dafpy.data dafpy.example_data dafpy.formats dafpy.generic_functions dafpy.julia_import dafpy.operations dafpy.queries dafpy.reconstruction dafpy.storage_types dafpy.views

N

name (dafpy.data.DafReader property)

Names (class in dafpy.queries)

O

Or (class in dafpy.queries)

OrNot (class in dafpy.queries)

P

parse_query() (in module dafpy.queries)

Q

Quantile (class in dafpy.operations) Query (in module dafpy.queries)

query_result_dimensions() (in module dafpy.queries) QueryOperation (class in dafpy.operations) QuerySequence (class in dafpy.operations)

R

read_only() (dafpy.data.DafReader method) (dafpy.data.DafReadOnly method) reconstruct_axis() (in module dafpy.reconstruction)

ReductionOperation (class in dafpy.operations) relayout_matrix() (dafpy.data.DafWriter method) Round (class in dafpy.operations)

S

scalars_set() (dafpy.data.DafReader method) set_matrix() (dafpy.data.DafWriter method) set_scalar() (dafpy.data.DafWriter method) set_vector() (dafpy.data.DafWriter method) setup_logger() (in module dafpy.generic_functions) Significant (class in dafpy.operations)

SquareMaskColumn (class in dafpy.queries) SquareMaskRow (class in dafpy.queries) Std (class in dafpy.operations) StdN (class in dafpy.operations) StorageNumber (in module dafpy.storage_types) StorageScalar (in module dafpy.storage_types) Sum (class in dafpy.operations)

U

Undef (in module dafpy.julia_import)

UndefInitializer (class in dafpy.julia_import) use_default_julia_environment() (in module dafpy.julia_import)

V

Var (class in dafpy.operations) VarN (class in dafpy.operations) vectors_set() (dafpy.data.DafReader method)

ViewAxes (in module dafpy.views) ViewData (in module dafpy.views) viewer() (in module dafpy.views)

X

Xor (class in dafpy.queries)

XorNot (class in dafpy.queries)