One-shot factory for a DafAnnData facade. — as_anndata • dafr

One-shot factory for a DafAnnData facade.

Usage

as_anndata(daf, obs_axis = NULL, var_axis = NULL, x_name = "UMIs")

Arguments

daf: A DafReader.
obs_axis: Axis name for observations. Defaults auto-detect: "cell" then "metacell".
var_axis: Axis name for variables. Defaults to "gene".
x_name: Matrix name for X. Default "UMIs".

Value

A DafAnnData instance.

See also

Examples

d <- memory_daf()
add_axis(d, "cell", c("c1", "c2"))
add_axis(d, "gene", c("g1", "g2"))
set_matrix(d, "cell", "gene", "UMIs", matrix(1:4, 2, 2))
ann <- as_anndata(d)