Calculate peaks of chip-seq tracks
gpatterns.chip2peaks(chip_tracks, quant_thresh = 0.999, normalize = NULL,
logical_gate = "|")
Arguments
- chip_tracks
- names of chip-seq tracks
- quant_thresh
- quantile of chip signal that would be considered as peak
- normalize
- normalize all the regions to have the same size.
if NULL no normalization would be done.
- logical_gate
- logical function to combine the different tracks, e.g. '|' or '&'
Value
intervals set with peaks