Creates patterns attributes of track
gpatterns.create_patterns_track(track, description, pat_space,
patterns_tab = NULL, add_read_id = TRUE, noise_threshold = 0.2,
overwrite = TRUE, canonize = FALSE, add_biploar_stats = FALSE, ...)
Arguments
- track
- track name
- description
- a character string description
- pat_space
- pattern space data frame
(output of gpatterns.tracks_to_pat_space or gpatterns.intervs_to_pat_space)
needs to have the following fields: chrom,start,end,fid
- patterns_tab
- table with patterns (output of gpatterns.tidy_cpgs_to_pats)
needs to have the following fields: fid,pattern. If NULL it would be generated
automatically.
- add_read_id
- save the read_id together with the patterns
- noise_threshold
- threshold to consider pattern as 'noise'
- overwrite
- overwrite existing tracks
- canonize
- convert to canonic form (see:
gintervals.canonic).
warning: may lose data
- add_biploar_stats
- run mixture model and add bipolaritly stats.
(warning: heavy computation)
- ...
- additional parameters for gpatterns.calc_bipolarity