Filter intervals set by distance from another intervals set
gpatterns.filter_by_dist(intervals, annot_intervs = NULL,
annot_intervs_dist = 0, orientation = "upstream", use_tss = FALSE,
tss_max_dist = 1000)
Arguments
- intervals
- intervals to filter
- annot_intervs
- annotation intervals to filter by
- annot_intervs_dist
- maximal distance from annot_intervs
- orientation
- orientation (upstream, downstream or both)
- use_tss
- use TSS as annot intervs
- tss_dist
- annot_intervs_dist for TSS