Calculate pattern coverage for each CpG
gpatterns.get_pat_cov(track, pat_len, max_span = 500, by_coord_bin = TRUE,
parallel = getOption("gpatterns.parallel"))
Arguments
- track
- name of track
- pat_len
- pattern length
- max_span
- maximum span to look for CpGs
- by_coord_bin
- execute separatly for each coordinates bin
(for tracks that do not fit into memory)
- parallel
- execute parallely