Calculate QC statistics for track
gpatterns.get_pipeline_stats(track, tidy_cpgs_stats_dir = NULL,
uniq_tidy_cpgs_stats_dir = NULL, add_mapping_stats = FALSE,
add_insert_length_stats = TRUE)
Arguments
- track
- track name (or mutiple track names)
- tidy_cpgs_stats_dir
- directory with tidy_cpgs stats files (cannot be used with multiple tracks)
- uniq_tidy_cpgs_stats_dir
- directory with filter_dups stats files (cannot be used with multiple tracks)
- add_mapping_stats
- add full mapping statistics (singles, discordant etc.)
- add_insert_length_stats
- add average insert length
Value
data frame with 'track' field with the track name pipeline statistics