Get coverage of intervals in multiple tracks

gpatterns.intervals_coverage(tracks, intervals, iterator = NULL,
  file = NULL, intervals.set.out = NULL, pre_screen = TRUE,
  frag_cov = FALSE)

Arguments

tracks: methylation tracks
intervals: genomic scope for which the function is applied
iterator: see iterator in gextract. if NULL iterator would be set to CpGs
file: save output to file (only in non tidy mode, would not filer by variance)
intervals.set.out: save output big intervals set (only in tidy mode, would not filter by variance)
pre_screen: screen for covered intervals before calculating the total coverage (for large intervals set)
frag_cov: use fragment coverage (if exists)

intervals set with 'sum' column containing the total coverage (sum) in all the tracks