Define putative enhancer regions from chip-seq tracks
gpatterns.putative_enhancers(chip_tracks, quant_thresh = 0.999,
normalize = NULL, min_tss_dist = 2000, logical_gate = "|")
Arguments
- chip_tracks
- names of chip-seq tracks
- quant_thresh
- quantile of chip signal that would be considered as peak
- normalize
- normalize all the regions to have the same size.
if NULL no normalization would be done.
- min_tss_dist
- minimal (absolute) distance from TSS
- logical_gate
- logical function to combine the different tracks, e.g. '|' or '&'
Value
intervals set with putative enhancers