screen intervals by coverage in multiple tracks
gpatterns.screen_by_coverage(tracks, intervals, iterator, min_cov,
min_samples = NULL, intervals.set.out = NULL, sum_tracks = FALSE)
Arguments
- tracks
- methylation tracks
- intervals
- genomic scope for which the function is applied
- iterator
- see iterator in gextract. if NULL iterator
would be set to CpGs
- min_cov
- minimal coverage for iterator interval
- min_samples
- minimal number of samples with cov >= min_cov. if min_cov
is NULL it would be set to 1.
- intervals.set.out
- intervals.set.out
- sum_tracks
- sum the coverage from all tracks (min_samples parameter is ignored)