Generate CpG pattern frequency from tidy_cpgs

Generate CpG pattern frequency from tidy_cpgs

gpatterns.tidy_cpgs_2_pat_freq(calls, pat_length = 2, min_cov = 1,
  tidy = TRUE)

Arguments

calls

tidy_cpgs

pat_length

length of the pattern, e.g. for pat_lenth == 2 patterns would be 00,01,10,11

min_cov

minimal coverage

tidy

tidy