Generate pattern space
gpatterns.tracks_to_pat_space(tracks, pat_len, max_span = NULL,
exclude_intervals = NULL, exclude_cpgs = NULL, min_cov = 1)
Arguments
- tracks
- tracks
- pat_len
- pattern length
- max_span
- maximum span to look for CpGs
- exclude_intervals
- intervals to exclude
- exclude_cpgs
- CpGs to exclude
- min_cov
- minimal coverage per CpG