McPeaks

An ATACPeaks object with data over metacells

An ATACPeaks object with data over cells

Slots

egc

normalized metacell accessibility: fraction of accessibility per metacell scaled to the mc_size_eps_q quantile of metacell size. Accessibility is normalized by peak length.

fp

a matrix showing for each peak (row) the relative enrichment of umis in log2 scale, i.e. \(log2((1 + egc) / median(1 + egc))\)

mc_size_eps_q

quantile of MC size (in UMIs) to scale the number of UMIs per metacell. See project_atac_on_mc

cell_to_metacell

a data frame with a column called 'metacell' and a column called 'cell_id'

metacells

a vector of metacells IDs.