Remove cells — atac_ignore_cells • mcATAC

This function removes a given list of cells from the .code mat slot.

Usage

atac_ignore_cells(atac, ig_cells)

Arguments

atac: an ScPeaks object
ig_cells: a vector of cell names (10X barcodes) to removes

Value

an scATAC object with the given cells removed.

Examples

if (FALSE) {
cs <- Matrix::colSums(atac_sc@mat)
big_cells <- names(cs)[which(cs >= quantile(cs, 0.98))]
atac_sc_filtered <- atac_ignore_cells(atac_sc, big_cells)
}