Get chromosomes from a bam file

Usage

bam_file_chromosomes(bam_file, samtools_bin = "samtools")

Arguments

bam_file

name of the bam file

samtools_bin

path to samtools executable

Value

a vector of strings with the chromosome names

Examples

if (FALSE) {
bam_file_chromosomes("pbmc_data/possorted_bam.bam")
}