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Test if mcATAC has the required dependencies

Source: R/utils.R
check_dependencies.Rd

Tests if mcATAC has the following dependencies: "grep", "awk", "zcat", "sed", "sort", "head", "tail", "wc" and "uniq". If samtools or tabix are not installed, a warning is issued.

Usage

check_dependencies()

Value

a vector of the dependencies that are not available (invisibly)

Examples

check_dependencies()
#> ✔ All dependencies are available.