Download example data from 10x

Download the following dataset from 10x site: PBMC from a healthy donor - granulocytes removed through cell sorting (10k) When fragments=TRUE the fragment file and its index are downloaded as well. Link: https://support.10xgenomics.com/single-cell-multiome-atac-gex/datasets/1.0.0/pbmc_granulocyte_sorted_10k
Processed data: Filtered feature barcode matrix MEX (DIR)
Fragments: ATAC Per fragment information file (TSV.GZ)

Usage

download_pbmc_example_data(dir = "pbmc_data", fragments = FALSE)

Arguments

dir

directory to download the data to

fragments

download fragments file (and its index)

Examples

if (FALSE) {
download_pbmc_example_data()
download_pbmc_example_data(fragments = TRUE)
}