Generate a ucsc genome browser file for each metacell cluster
Source:R/export.R
export_atac_clust_ucsc.Rd
Generate a ucsc genome browser file for each metacell cluster
Usage
export_atac_clust_ucsc(
atac_mc,
track_prefix,
output_dir = getwd(),
clust_vec = NULL,
normalization = "none"
)
Arguments
- atac_mc
McPeaks object
- track_prefix
prefix for generated misha tracks.
- output_dir
(optional) name of the directory to write files to
- clust_vec
(optional) a vector of length #metacells representing an annotation/clustering (can be output of
gen_atac_mc_clust
)- normalization
(optional) normalization method, either 'none', 'lfcom' (log2 fold-change over median), 'zs' (Z-scores)