gnereate/filter gene features from statistics on correlation with umi count

gnereate/filter gene features from statistics on correlation with umi count

mcell_gset_filter_szcor(gstat_id, gset_id, T_szcor, force_new = F)

Arguments

gstat_id

the ID of the gstat object to use

gset_id

if this exists, filter_varmean will restrict hte current genes in the set with genes matching the var mean threshold, if not, it will generate a new gene sets object with one set including all high variance genes

T_szcor

upper limit on normalized sz_cor (low values mark interesting gene features). If you use this, consider values around -0.1 - but evaluate carefully your decision using the gstat empirical data