calculate expression of loci to specific genes before and after TME deconvolution

calculate expression of loci to specific genes before and after TME deconvolution

calc_gene_cor_before_after_deconv(deconv_list, raw_meth, genes)

Arguments

deconv_list	output of deconv_TME.
raw_meth	intervals set with raw methylation
genes	vector with gene names

Value

data frame with intervals set that are in raw_meth and normalized methylation and their correlations to the gene expression in the raw and normalized methylation datasets.