cluster_em_cross_cor.Rd
Cluster Expression-methylation cross-correlation
cluster_em_cross_cor( em_list, k_meth, k_expr = k_meth, hc_exp = NULL, normal_meth = NULL )
em_list | output of |
---|---|
k_meth | number of methylation clusters |
k_expr | number of expression clusters |
hc_exp |
|
a list with:
"em_cross"Matrix with expression-methylation correlation values. Rows are loci and columns are genes
meth_matMatrix with methylation values (filtered)
expr_matMatrix with expression values (filtered)
hc_methhclust object with clustering of the loci
hc_exphclust object with clustering of the genes
meth_clusttibble with cluster number for each row
expr_clusttibble with cluster number for each column
expr_modsmatrix with mean expression in every cluster for each sample
meth_modsmatrix with mean methylation in every cluster for each sample
expr_mods_locusmatrix with mean expression in every cluster for each locus
meth_mods_genematrix with mean methylation in every cluster for each gene