normalize_immune_cafs_meth.Rd
Normalize methylation matrix for immune and CAF signatures
normalize_immune_cafs_meth( em_clust, k, meth_mat = em_clust$meth_mat, scale_feats = TRUE, caf_gene = "CAV1", immune_gene = "CD3D" )
em_clust | output of |
---|---|
k | k parameter for knn |
scale_feats | scale features (recommended) |
caf_gene | name of gene that is inside the CAF cluster (default: "CAV1") |
immune_gene | name of gene that is inside the immune cluster (default: "CD3D") |
normalized methylation matrix