Plot the genome browser — browser_plot • misha.browser

Renders all panels for the current or specified region.

Usage

browser_plot(
  browser,
  region = NULL,
  gene = NULL,
  span = NULL,
  parallel = getOption("misha.browser.parallel", FALSE),
  profile = getOption("misha.browser.profile", FALSE)
)

Arguments

browser: Browser object
region: Optional region to plot (uses current if NULL)
gene: Optional gene name to center on
span: Optional span in bp (used with gene)
parallel: Logical, enable parallel panel data extraction (default: from option). Requires future package and a parallel plan to be set (e.g., future::plan(future::multisession)).
profile: Logical, enable profiling output (default: from option)

Value

A patchwork plot object

Examples

if (FALSE) { # \dontrun{
browser <- browser_create(config = "config.yaml")
browser_plot(browser)
browser_plot(browser, gene = "Tbx5", span = 2e6)

# Enable profiling
options(misha.browser.profile = TRUE)
browser_plot(browser)

# Enable parallel extraction
future::plan(future::multisession, workers = 4)
browser_plot(browser, parallel = TRUE)
} # }