R/guideSet.R
guideSet-class.Rd
An S4 class to store genomic annotations and results of Repguide functions.
genome
BSgenome object.
tes
GRanges object
cis
GRanges object
refdir
Character
tempdir
Character
targets
GRanges object
blacklist
GRanges object
whitelist
GRanges object
plots
List
guide_length
Integer
families
Character
PAM
Character
kmers
GRanges
alignments
DNAStringSetList
consensus
DNAStringSet
combinations
Data.frame
calls
List
.n_cores
Integer
.seed
Integer