Returns transposable element families from guideSet

Source: R/accessors.R

Retrieves all available families in the provided guideSet that match defined characteristics.

repnames(guideSet, pattern = NULL, fixed = FALSE)

Arguments

guideSet

guideSet object to query.
pattern

Regular expression. Returns only families that match pattern.
fixed

Logical. If TRUE, pattern is matched as is.

Value

Character vector.

See also

createGuideSet()

Examples

if (FALSE) {
gs <- createGuideSet(genome = Hsapiens, tes = te_annotation_df)
families <- repnames(gs, pattern = 'LTR12') # returns all families containing 'LTR12' in their name.

# Using a pattern not found in guideSet will suggest similar hits, e.g.:
repnames(gs, pattern = 'LTR5HS')
}