shaman_gplot_map
shaman_gplot_map(
points,
interval_range = NA,
rotate = TRUE,
point_size = 0.1,
add_axis = TRUE
)Arguments
- points
A dataframe containing the points (start1, start2).
- interval_range
Data frame with the start and end of the range to plot. If NA, the range of start1 in points.
- rotate
Binary flag, indicating if the plot should be rotated by 45 degrees.
- point_size
Cex size of the points in the plot.
- add_axis
Binary flag, indicating if axis should be added to plot.
Value
A ggplot object with the map.
Details
Plots hic contact matrix.
Examples
# Set misha db to test
library(misha)
gsetroot(shaman_get_test_track_db())
points <- gextract("hic_obs", gintervals.2d(2, 176.5e06, 177e06, 2, 176.5e06, 177e06))
shaman_gplot_map(points)
