shaman_gplot_map_score
shaman_gplot_map_score(
points_score,
interval_range = NA,
rotate = TRUE,
point_size = 0.1,
add_axis = TRUE
)Arguments
- points_score
A dataframe containing the points (start1, start2) and their normalized score.
- interval_range
Data frame with the start and end of the range to plot. If NA, the range of start1 in points_score.
- rotate
Binary flag, indicating if the plot should be rotated by 45 degrees.
- point_size
Cex size of the points in the plot.
- add_axis
Binary flag, indicating if axis should be added to plot.
Value
A ggplot object with the map.
Details
Plots observed hic contact matrix color-coded by normalized scores.
Data can be either extracted directly from score track or computed via the functions:
shaman_score_hic_mat(), shaman_shuffle_and_score_hic_mat().
Examples
# Set misha db to test
library(misha)
gsetroot(shaman_get_test_track_db())
points <- gextract("hic_score", gintervals.2d(2, 176.5e06, 177e06, 2, 176.5e06, 177e06),
colnames = "score"
)
shaman_gplot_map_score(points)
