Umi4C Package

Welcome to umi4cPackage Github repository.

What is umi4cPackage?

umi4cPackage is a processing and analysis pipeline for UMI-4C experiment.

Installation

Requirements:

The pipeline is designed to run on a standard linux machine. The basic requirements are:

• Perl
• Bowtie2: http://bowtie-bio.sourceforge.net/bowtie2.
• Reference index for Bowtie2.
• R packages:
  • devtools.
  • misha.
  • zoo.

Installation

remotes::install_github("tanaylab/umi4cpackage", build_vignette = TRUE)
library(umi4cPackage)

Using the package

Please refer to the package vignette for usage and a complete step by step example.

vignette('umi4c-usage', package='umi4cPackage')