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Example data

Example Storage

DataAxesFormats.ExampleData.example_cells_daf — Function 
example_cells_daf(; name::AbstractString = "cells!")::MemoryDaf

Load the cells example data into a MemoryDaf . 

print(description(example_cells_daf()))

# output

name: cells!
type: MemoryDaf
scalars:
  organism: "human"
  reference: "test"
axes:
  cell: 856 entries
  donor: 95 entries
  experiment: 23 entries
  gene: 683 entries
vectors:
  cell:
    donor: 856 x Str (Dense)
    experiment: 856 x Str (Dense)
  donor:
    age: 95 x UInt32 (Dense)
    sex: 95 x Str (Dense)
  gene:
    is_lateral: 683 x Bool (Dense; 438 (64%) true)
matrices:
  cell,gene:
    UMIs: 856 x 683 x UInt8 in Columns (Dense)
  gene,cell:
    UMIs: 683 x 856 x UInt8 in Columns (Dense)
DataAxesFormats.ExampleData.example_metacells_daf — Function 
example_metacells_daf(; name::AbstractString = "cells!")::MemoryDaf

Load the metacells example data into a MemoryDaf . 

print(description(example_metacells_daf()))

# output

name: metacells!
type: MemoryDaf
axes:
  cell: 856 entries
  gene: 683 entries
  metacell: 7 entries
  type: 4 entries
vectors:
  cell:
    metacell: 856 x Str (Dense)
  gene:
    is_marker: 683 x Bool (Dense; 650 (95%) true)
  metacell:
    type: 7 x Str (Dense)
  type:
    color: 4 x Str (Dense)
matrices:
  gene,metacell:
    fraction: 683 x 7 x Float32 in Columns (Dense)
  metacell,metacell:
    edge_weight: 7 x 7 x Float32 in Columns (Dense)
DataAxesFormats.ExampleData.example_chain_daf — Function 
example_chain_daf(; name::AbstractString = "chain!")::DafWriter

Load a chain of both the cells and metacells example data. 

print(description(example_chain_daf()))

# output

name: chain!
type: Write Chain
chain:
- MemoryDaf cells!
- MemoryDaf metacells!
scalars:
  organism: "human"
  reference: "test"
axes:
  cell: 856 entries
  donor: 95 entries
  experiment: 23 entries
  gene: 683 entries
  metacell: 7 entries
  type: 4 entries
vectors:
  cell:
    donor: 856 x Str (Dense)
    experiment: 856 x Str (Dense)
    metacell: 856 x Str (Dense)
  donor:
    age: 95 x UInt32 (Dense)
    sex: 95 x Str (Dense)
  gene:
    is_lateral: 683 x Bool (Dense; 438 (64%) true)
    is_marker: 683 x Bool (Dense; 650 (95%) true)
  metacell:
    type: 7 x Str (Dense)
  type:
    color: 4 x Str (Dense)
matrices:
  cell,gene:
    UMIs: 856 x 683 x UInt8 in Columns (Dense)
  gene,cell:
    UMIs: 683 x 856 x UInt8 in Columns (Dense)
  gene,metacell:
    fraction: 683 x 7 x Float32 in Columns (Dense)
  metacell,metacell:
    edge_weight: 7 x 7 x Float32 in Columns (Dense)

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