An S4 class to store genomic annotations and results of Repguide functions.

Slots

genome

BSgenome object.

tes

GRanges object

cis

GRanges object

refdir

Character

tempdir

Character

targets

GRanges object

blacklist

GRanges object

whitelist

GRanges object

plots

List

guide_length

Integer

families

Character

PAM

Character

kmers

GRanges

alignments

DNAStringSetList

consensus

DNAStringSet

combinations

Data.frame

calls

List

n_cores

Integer

seed

Integer