Import TE intervals from DFAM

Imports TE interval coordinates from DFAM database

importDFAM(path, curate = FALSE, main_assembly = TRUE)

Arguments

path	Character. Path to file.
curate	Logical. If TRUE, calls `curateTEs` to resolve overlapping TE intervals.
main_assembly	Logical. If TRUE (the default), only returns TE intervals on the main chromosomes.

Value

Returns a GRanges object with TE intervals