Functions for alignment benchmarking
mutateReads()
Randomly mutate read sequences
mutateSeqs()
Randomly mutate DNA sequences
Functions for importing data
importBAM()
Parallel import of BAM files
importDFAM()
Import TE intervals from DFAM
importRMSK()
Import TE intervals from Repeatmasker
importUCSC()
Import TE intervals from UCSC table browser
Functions for transforming data
msaToLong()
Transforms multiple sequence alignment into long data.frame