PBM Class

This class represents a PBM (Physical Binding Model) object. It inherits from the IQFeature class.

Usage

# S4 method for class 'PBM'
show(object)

Arguments

object

An instance of PBM.

Slots

pssm

A matrix representing the position-specific scoring matrix.

max_energy

A numeric value representing the maximum energy for value normalization

min_energy

A numeric value representing the minimal energy for value normalization

energy_range

A numeric value representing the energy range for value normalization

spat

A data frame representing the spatial distribution (optional)

spat_min

A numeric value representing the spatial minimum (optional).

spat_max

A numeric value representing the spatial maximum (optional)

seq_length

A numeric value representing the length of the sequence for spatial distribution (optional)