Compute tracks quantiles
compute_tracks_q.RdThis function computes the quantiles for a set of ATAC-seq tracks.
Usage
compute_tracks_q(
atac_names,
atac_tracks,
iterator = 20,
norm_q = 0.995,
norm_intervals = gintervals.all(),
tn5bias_track = "tn5bias",
normalize_tn5bias = TRUE,
sample_n = 10000
)Arguments
- atac_names
A character vector specifying the names of the ATAC-seq tracks.
- atac_tracks
A list of numeric vectors representing the ATAC-seq tracks.
- iterator
An iterator object used for computing quantiles.
- norm_q
A numeric vector specifying the quantiles to compute for each track. If a single value, the same quantile is used for all tracks.
- norm_intervals
A numeric vector specifying the intervals for computing quantiles.
- tn5bias_track
A numeric vector representing the TN5 bias track.
- normalize_tn5bias
Logical, whether to normalize the TN5 bias track.
- sample_n
A numeric value specifying the maximum number of data points to use for computing quantiles.