Create Dinucleotide Features
create_dinuc_features.RdThis function creates IQSeqFeature objects for all possible dinucleotides.
Usage
create_dinuc_features(
traj_model,
quantile = 0.99,
size = traj_model@params$peaks_size,
dinucleotides = c("AA", "AC", "AG", "AT", "CA", "CC", "CG", "CT", "GA", "GC", "GG",
"GT", "TA", "TC", "TG", "TT"),
feat_names = dinucleotides
)Arguments
- traj_model
A trajectory model object.
- quantile
The quantile to use for normalization (default is 0.99).
- size
The size of the sequences to use for feature computation.
- dinucleotides
A vector of dinucleotides to create features for (default is all possible dinucleotides).
- feat_names
A vector of feature names to use for each dinucleotide (default is the dinucleotide itself).