Compute features for a list of IQFeature and IQFeatureGroup objects

This function computes features for a given list of IQFeature and IQFeatureGroup objects, using either provided sequences or intervals.

Usage

iq_feature_list.compute(feature_list, sequences = NULL, intervals = NULL)

Arguments

feature_list

A list of IQFeature and/or IQFeatureGroup objects.

sequences

A vector of DNA sequences. Optional if intervals are provided.

intervals

A data frame of genomic intervals with columns 'chrom', 'start', and 'end'. Optional if sequences are provided.

Value

A data frame containing the computed features for all objects in the feature_list.