Compute all features or responses required by an IQModel — iq_model.compute_features • iceqream

This function computes features or feature responses for an IQModel based on the provided inputs.

Usage

iq_model.compute_features(
  model,
  sequences = NULL,
  intervals = NULL,
  new_data = NULL,
  return_responses = FALSE,
  return_separate = FALSE,
  normalize_energies = TRUE
)

Arguments

model: An IQModel object
sequences: Optional vector of DNA sequences
intervals: Optional data frame of genomic intervals
new_data: Optional data frame of pre-computed features
return_responses: Logical indicating whether to return responses (TRUE) or raw features (FALSE)
return_separate: Logical indicating whether to return separate data frames
normalize_energies: Logical indicating whether to normalize PBM energies

Value

A data frame of computed features/responses or list of separate components