SCENIC Motif Clusters

A data frame containing a representative motif from each SCENIC cluster.

Usage

motif_db_scenic_clusters

Format

The same as motif_db but filtered to only include SCENIC motifs.

Source

https://doi.org/10.1038/nmeth.4463

See also

motif_db

Examples

data(motif_db_scenic_clusters)
head(motif_db_scenic_clusters)
#>                                       motif pos          A         C         G
#> 1 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   1  0.1633990  0.163399 96.895421
#> 2 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   2  9.9673210 13.888901 72.712407
#> 3 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   3  0.1633990 98.856209  0.163399
#> 4 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   4 65.5228541 14.542490 15.849689
#> 5 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   5  0.1633990 97.549021  2.124180
#> 6 SCENIC.kznf__ZNF264_Imbeault2017_OM_RCADE   6  0.1633989  9.313725  9.967315
#>            T dataset                         motif_orig cluster
#> 1  2.7777806  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1
#> 2  3.4313703  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1
#> 3  0.8169931  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1
#> 4  4.0849671  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1
#> 5  0.1633990  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1
#> 6 80.5555605  SCENIC kznf__ZNF264_Imbeault2017_OM_RCADE     0.1