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This function computes local energies for a given PBM and set of sequences.

Usage

pbm.compute_local(pbm, sequences, response = FALSE, scaling_q = NULL)

Arguments

pbm

A PBM object

sequences

A vector of DNA sequences

response

Logical, whether to compute the response (default is FALSE)

scaling_q

Scaling quantile for normalization (default is NULL)

Value

A matrix of computed local energies