This function computes local energies for a given PBM and set of sequences.
Usage
pbm.compute_local(pbm, sequences, response = FALSE, scaling_q = NULL)
Arguments
- pbm
A PBM object
- sequences
A vector of DNA sequences
- response
Logical, whether to compute the response (default is FALSE)
- scaling_q
Scaling quantile for normalization (default is NULL)
Value
A matrix of computed local energies
