Extract local PBM scores / response — pbm.gextract_local • iceqream

This function extracts local PBM scores for genomic intervals and optionally computes the response.

Usage

pbm.gextract_local(pbm, intervals, response = FALSE, scaling_q = 0.995)

Arguments

pbm: A PBM object
intervals: Genomic intervals to extract
response: Logical, whether to compute the response (default is FALSE)
scaling_q: Scaling quantile for normalization (default is NULL)

Value

A matrix of extracted local energies / response