Extract local PBM scores / response

This function extracts local PBM scores for genomic intervals and optionally computes the response.

Usage

pbm.gextract_local(pbm, intervals, response = FALSE, scaling_q = 0.995)

Arguments

pbm

A PBM object

intervals

Genomic intervals to extract

response

Logical, whether to compute the response (default is FALSE)

scaling_q

Scaling quantile for normalization (default is NULL)

Value

A matrix of extracted local energies / response