This function extracts local PBM scores for sequences and optionally computes the response for a list of PBMs.
Usage
pbm_list.compute_local(pbm_list, sequences, response = FALSE, scaling_q = NULL)
Arguments
- pbm_list
A list of PBM objects
- sequences
A vector of DNA sequences
- response
Logical, whether to compute the response (default is FALSE)
- scaling_q
Scaling quantile for normalization (default is NULL)
Value
A list of matrices containing extracted local energies for each PBM
