This function extracts local PBM scores for genomic intervals and optionally computes the response for a list of PBMs.
Usage
pbm_list.gextract_local(
pbm_list,
intervals,
response = FALSE,
scaling_q = NULL
)
Arguments
- pbm_list
A list of PBM objects
- intervals
Genomic intervals to extract
- response
Logical, whether to compute the response (default is FALSE)
- scaling_q
Scaling quantile for normalization (default is NULL)
Value
A list of matrices containing extracted local energies for each PBM
