Extract local PBM scores / response for a list of PBMs — pbm_list.gextract_local • iceqream

This function extracts local PBM scores for genomic intervals and optionally computes the response for a list of PBMs.

Usage

pbm_list.gextract_local(
  pbm_list,
  intervals,
  response = FALSE,
  scaling_q = NULL
)

Arguments

pbm_list: A list of PBM objects
intervals: Genomic intervals to extract
response: Logical, whether to compute the response (default is FALSE)
scaling_q: Scaling quantile for normalization (default is NULL)

Value

A list of matrices containing extracted local energies for each PBM