Plot motif spatial frequency
plot_motif_spatial_freq.RdThis function plots the spatial frequency of a given motif across genomic positions.
Usage
plot_motif_spatial_freq(
spatial_freqs,
motif,
smooth = 10,
plot_atac = FALSE,
linewidth = 1
)Arguments
- spatial_freqs
A data frame containing the spatial frequency of motifs and/or ATAC-seq peaks. Output of
compute_traj_model_spatial_freq.- motif
A string specifying the motif to plot.
- smooth
An integer specifying the window size for smoothing the frequency values.
- plot_atac
A logical indicating whether to plot the ATAC-seq frequency instead of the motif frequency.
- linewidth
The width of the line in the plot.