Plot multi-trajectory model report — plot_multi_traj_model

This function plots a report for a multi-trajectory model. The report includes the motifs, spatial models, and partial responses for each trajectory model when type is "pr". If type is "boxp", the function will plot the boxplots of the energy vs response for each motif. If type is "spat", the function will plot the spatial distribution of the motifs.

Usage

plot_multi_traj_model_report(
  multi_traj,
  filename = NULL,
  width = NULL,
  height = NULL,
  dev = grDevices::pdf,
  title = NULL,
  use_full = FALSE,
  names_map = NULL,
  type = "pr",
  ...
)

Arguments

multi_traj: The multi-trajectory model object.
filename: Optional. The name of the output file. If not provided, the plot will be displayed on the screen.
width: Optional. The width of the output plot in inches.
height: Optional. The height of the output plot in inches.
dev: Optional. The graphics device to use for output. Default is 'pdf'.
title: Optional. The title of the plot.
use_full: Optional. Whether to use the models with all the motifs or not. Default is FALSE.
names_map: a named vector to map the names of the motifs to new names.
type: Optional. The type of the plot, can be "pr", "boxp" or "spat". Default is "pr".
...: Additional arguments to be passed to the plotting function.

Value

A ggplot2 object (invsibly if a filename is provided).