Plot a report of trajectory motifs

Usage

plot_traj_model_report(
  traj_model,
  filename = NULL,
  motif_num = NULL,
  free_coef_axis = TRUE,
  spatial_freqs = NULL,
  width = NULL,
  height = NULL,
  dev = grDevices::pdf,
  title = NULL,
  motif_titles = NULL,
  sort_motifs = TRUE,
  names_map = NULL,
  boxp_ylim = c(-0.5, 0.5),
  boxp_ylab = "ATAC difference",
  boxp_y_data = traj_model@diff_score,
  ...
)

Arguments

traj_model: Trajectory model object. Please run regress_trajectory_motifs first.
filename: Filename to save the plot to. If NULL, the plot will be returned.
motif_num: Number of motifs to plot. If NULL, all motifs will be plotted.
free_coef_axis: Whether to use a free axis for the coefficient plots.
spatial_freqs: Pre-computed spatial frequencies to plot. Use compute_traj_model_spatial_freq to compute.
width: Width of the plot.
height: Height of the plot.
dev: Device to use for saving the plot. Default: grDevices::pdf.
title: Title of the plot.
motif_titles: Titles for the motifs. If NULL, the motif names will be used.
sort_motifs: Whether to sort the motifs by the absolute value of the coefficients / r2 values.
names_map: a named vector to map the names of the motifs to new names.
boxp_ylim: ylimits for the boxplot of energy vs response.
boxp_ylab: ylab for the boxplot of energy vs response.
boxp_y_data: y_data for the boxplot of energy vs response.
...: Additional arguments to pass to the device.

Value

ggplot2 object. If filename is not NULL, the plot will be saved to the file and the function will return invisible(NULL).