Function reference • metacell.flow

All functions
`initialize(<tgMCTNetFlow>)`	Construct a flow object given an mctnetwork
`initialize(<tgMCTNetwork>)`	Construct a meta cell time network
`mcell_mctnet_from_mgraph()`	Construct and initialize a mct time network from a graph and leak table
`mcell_new_mctnetflow()`	Generate a new flow object in scdb
`mcell_new_mctnetwork()`	Generate a new network in scdb
`mctnetflow_comp_propagation()`	Compute matrices for forward and backwrd propagation using the flows
`mctnetflow_gen_e_gmt_p()`	This generate two large matrices showing expression of genes per metacell ad time point, as well as the expression of the gene in inferred ancestral states given the flow model
`mctnetflow_gen_gmod_mc_t()`	Given a list of genes and a matrix, this compute mean umi per metacell (rows) and time (column).
`mctnetflow_gen_mincost()`	Compute mincost flow and update the mct objects with flows and inferred mc capacity per time
`mctnetflow_get_flow_mat()`	Compute matrix of flows between MCs in a given time point
`mctnetflow_get_type_flows()`	Compute matrix of flows over cell types
`mctnetflow_propogate_from_t()`	Compute backward and forward flow propgation of metacell probability from time t
`mctnetwork_clust_flows()`	Clustring MCs based on the flow graph
`mctnetwork_comp_manifold_costs()`	Compute and update manifold costs for a mc time network
`mctnetwork_gen_network()`	Compute and update network strcuture from mc, manifodld costs
`metacell.flow`	metacell.flow
`scdb_add_mctnetflow()`	scdb_add_mctnetflow - add mctnetflow to the DB and cahce
`scdb_add_mctnetwork()`	scdb_add_mctnetwork - add mctnetwork to the DB and cahce
`scdb_del_mctnetflow()`	scdb_del_mctnetflow - del mctnetflow from the DB and cahce
`scdb_del_mctnetwork()`	scdb_del_mctnetwork - del mctnetwork from the DB and cahce
`scdb_flow_init()`	Initializing scdb_flow
`scdb_mctnetflow()`	scdb_mctnetflow - get a mctnetflow object
`scdb_mctnetwork()`	scdb_mctnetwork - get a mctnetwork object
`tgMCTNetFlow-class` `tgMCTNetFlow`	Flow solution over a metacell temporal network
`tgMCTNetwork-class` `tgMCTNetwork`	temporal netwrok over metacells

Reference

All functions