Wrapper around gtrack.import_mappedseq for (multiple) bam files

gtrack.import_mappedseq_bam(bam_files, min_mapq = NULL, ...)

Arguments

bam_files

vector of bam (or sam) files to import

min_mapq

skip alignments with MAPQ smaller than min_mapq

...

Arguments passed on to misha::gtrack.import_mappedseq

track: track name
description: a character string description
file: name of mapped sequences file
pileup: interval expansion
binsize: bin size of a dense track
cols.order: order of sequece, chromosome, coordinate and strand columns in mapped sequences file or NULL if SAM file is used
remove.dups: if 'TRUE' the duplicated coordinates are counted only once.