Function reference • misha.ext

All functions
`fwrite_header()`	writes a data frame with a header
`fwrite_igv()`	Write IGV file from intervals set data frame
`fwrite_ucsc()`	Write USCS genome browser file from intervals set data frame
`gcluster.run2()`	Runs R commands on a cluster that supports SGE
`get_promoters()`	Define promoter regions
`gextract.left_join()`	Returns the result of track expressions evaluation for each of the iterator intervals, and cbinds the intervals (instead of intervalID)
`gextract_meth()`	gextract methylation data
`gintervals.filter()`	Filter intervals set by distance to another. A wrapper around gintervals.neighbours and filter(dist <= max_distance)
`gintervals.neighbors1()`	Finds neighbors between two sets of intervals (and does not return conflicting column names)
`gseq.create_track()`	Create sequence tracks for misha database
`gset_genome()`	Set misha root based on genome name
`gtrack.create_dirs()`	Create directories needed for track creation
`gtrack.import_mappedseq_bam()`	Wrapper around gtrack.import_mappedseq for (multiple) bam files
`gvtrack.array_extract()`	Extract a virtual track on each array.track column
`intervs_to_mat()`	Transform an intervals set to matrix
`mat_to_intervs()`	Transform a matrix with coordinate rownames to intervals set

Reference