misha package is a toolkit for analysis of genomic data. it implements an efficient data structure for storing genomic data, and provides a set of functions for data extraction, manipulation and analysis.
You can install the released version of misha from CRAN with:
And the development version from GitHub with:
See the Genomes vignette for instructions on how to create a misha database for common genomes.
See the user manual for more usage details.
misha 4.2.0, the package no longer stores global variables such as
GROOT. Instead, these variables are stored in a special environment called
.misha. This means that scripts written for older versions of
misha will no longer work. To run such scripts, either add a prefix of
.misha$ to all those variables (
.misha$ALLGENOME instead of
ALLGENOME), or run the following command before running the script:
ALLGENOME <<- .misha$ALLGENOME GROOT <<- .misha$GROOT ALLGENOME <<- .misha$ALLGENOME GINTERVID <<- .misha$GINTERVID GITERATOR.INTERVALS <<- .misha$GITERATOR.INTERVALS GROOT <<- .misha$GROOT GWD <<- .misha$GWD GTRACKS <<- .misha$GTRACKS